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Current Issue of Genome Research

Table of Contents — December 2019, 29 (12)

Table of Contents

December 2019; 29 (12)

Research

  • Synchronized replication of genes encoding the same protein complex in fast-proliferating cells

    • Ying Chen,
    • Ke Li,
    • Xiao Chu,
    • Lucas B. Carey,
    • and Wenfeng Qian
    Genome Res. December 2019 29: 1929-1938; Published in Advance October 29, 2019, doi:10.1101/gr.254342.119

  • Promoter-specific dynamics of TATA-binding protein association with the human genome

    • Yuko Hasegawa and
    • Kevin Struhl
    Genome Res. December 2019 29: 1939-1950; Published in Advance November 15, 2019, doi:10.1101/gr.254466.119

  • Clonal copy-number mosaicism in autoreactive T lymphocytes in diabetic NOD mice

    • Maha Alriyami,
    • Luc Marchand,
    • Quan Li,
    • Xiaoyu Du,
    • Martin Olivier,
    • and Constantin Polychronakos
    Genome Res. December 2019 29: 1951-1961; Published in Advance November 6, 2019, doi:10.1101/gr.247882.118
    OPEN ACCESS ARTICLE

  • A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

    • Steffen Knauer,
    • Marie Javelle,
    • Lin Li,
    • Xianran Li,
    • Xiaoli Ma,
    • Kokulapalan Wimalanathan,
    • Sunita Kumari,
    • Robyn Johnston,
    • Samuel Leiboff,
    • Robert Meeley,
    • Patrick S. Schnable,
    • Doreen Ware,
    • Carolyn Lawrence-Dill,
    • Jianming Yu,
    • Gary J. Muehlbauer,
    • Michael J. Scanlon,
    • and Marja C.P. Timmermans
    Genome Res. December 2019 29: 1962-1973; Published in Advance November 19, 2019, doi:10.1101/gr.250878.119
    OPEN ACCESS ARTICLE

  • Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast

    • Wu Wei,
    • Bianca P. Hennig,
    • Jingwen Wang,
    • Yujie Zhang,
    • Ilaria Piazza,
    • Yerma Pareja Sanchez,
    • Christophe D. Chabbert,
    • Sophie H. Adjalley,
    • Lars M. Steinmetz,
    • and Vicent Pelechano
    Genome Res. December 2019 29: 1974-1984; Published in Advance November 18, 2019, doi:10.1101/gr.243378.118

  • Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation

    • Răzvan V. Chereji,
    • Peter R. Eriksson,
    • Josefina Ocampo,
    • Hemant K. Prajapati,
    • and David J. Clark
    Genome Res. December 2019 29: 1985-1995; Published in Advance September 11, 2019, doi:10.1101/gr.249326.119

Methods

  • Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome

    • Elisa Oberbeckmann,
    • Michael Wolff,
    • Nils Krietenstein,
    • Mark Heron,
    • Jessica L. Ellins,
    • Andrea Schmid,
    • Stefan Krebs,
    • Helmut Blum,
    • Ulrich Gerland,
    • and Philipp Korber
    Genome Res. December 2019 29: 1996-2009; Published in Advance November 6, 2019, doi:10.1101/gr.253419.119

  • Modeling Niemann–Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation

    • Steven Erwood,
    • Reid A. Brewer,
    • Teija M.I. Bily,
    • Eleonora Maino,
    • Liangchi Zhou,
    • Ronald D. Cohn,
    • and Evgueni A. Ivakine
    Genome Res. December 2019 29: 2010-2019; Published in Advance November 21, 2019, doi:10.1101/gr.250720.119

  • Network-based hierarchical population structure analysis for large genomic data sets

    • Gili Greenbaum,
    • Amir Rubin,
    • Alan R. Templeton,
    • and Noah A. Rosenberg
    Genome Res. December 2019 29: 2020-2033; Published in Advance November 6, 2019, doi:10.1101/gr.250092.119

  • Identifying gene function and module connections by the integration of multispecies expression compendia

    • Hao Li,
    • Daria Rukina,
    • Fabrice P.A. David,
    • Terytty Yang Li,
    • Chang-Myung Oh,
    • Arwen W. Gao,
    • Elena Katsyuba,
    • Maroun Bou Sleiman,
    • Andrea Komljenovic,
    • Qingyao Huang,
    • Robert W. Williams,
    • Marc Robinson-Rechavi,
    • Kristina Schoonjans,
    • Stephan Morgenthaler,
    • and Johan Auwerx
    Genome Res. December 2019 29: 2034-2045; Published in Advance November 21, 2019, doi:10.1101/gr.251983.119
    OPEN ACCESS ARTICLE

  • Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing

    • Laura M. Agosto,
    • Matthew R. Gazzara,
    • Caleb M. Radens,
    • Simone Sidoli,
    • Josue Baeza,
    • Benjamin A. Garcia,
    • and Kristen W. Lynch
    Genome Res. December 2019 29: 2046-2055; Published in Advance November 14, 2019, doi:10.1101/gr.248435.119

  • AIDE: annotation-assisted isoform discovery with high precision

    • Wei Vivian Li,
    • Shan Li,
    • Xin Tong,
    • Ling Deng,
    • Hubing Shi,
    • and Jingyi Jessica Li
    Genome Res. December 2019 29: 2056-2072; Published in Advance November 6, 2019, doi:10.1101/gr.251108.119

Resources

  • Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci

    • Jonathan M. Mudge,
    • Irwin Jungreis,
    • Toby Hunt,
    • Jose Manuel Gonzalez,
    • James C. Wright,
    • Mike Kay,
    • Claire Davidson,
    • Stephen Fitzgerald,
    • Ruth Seal,
    • Susan Tweedie,
    • Liang He,
    • Robert M. Waterhouse,
    • Yue Li,
    • Elspeth Bruford,
    • Jyoti S. Choudhary,
    • Adam Frankish,
    • and Manolis Kellis
    Genome Res. December 2019 29: 2073-2087; Published in Advance September 19, 2019, doi:10.1101/gr.246462.118
    OPEN ACCESS ARTICLE

  • Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

    • Jacob C. Kimmel,
    • Lolita Penland,
    • Nimrod D. Rubinstein,
    • David G. Hendrickson,
    • David R. Kelley,
    • and Adam Z. Rosenthal
    Genome Res. December 2019 29: 2088-2103; Published in Advance November 21, 2019, doi:10.1101/gr.253880.119
    OPEN ACCESS ARTICLE

  • The C. elegans 3′ UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3′-UTR biology, and miRNA targeting

    • Hannah S. Steber,
    • Christina Gallante,
    • Shannon O'Brien,
    • Po-Lin Chiu,
    • and Marco Mangone
    Genome Res. December 2019 29: 2104-2116; Published in Advance November 19, 2019, doi:10.1101/gr.254839.119
    OPEN ACCESS ARTICLE

Reviewer Index

This Issue

December 2019; 29 (12)
Cover
  1. Research
  2. Methods
  3. Resources
  4. Reviewer Index

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