Subject: Molecular Biology and Evolution Table of Contents for December 2019 ------=_Part_1473079697.1575070797124 Content-Type: text/plain;charset=UTF-8 Oxford Academic *** {Molecular Biology and Evolution} *** Volume 36, Issue 12, 1 December 2019 Read this issue (https://academic.oup.com/mbe/issue/36/12) ============================= Fast Track ============================Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter Annabel C Beichman, Klaus-Peter Koepfli, Gang Li, William Murphy, Pasha Dobrynin (https://academic.oup.com/mbe/article/36/12/2631/5481008) Disappearance of Icelandic Walruses Coincided with Norse Settlement Xénia Keighley, Snæbjörn Pálsson, Bjarni F Einarsson, Aevar Petersen, Meritxell Fernández-Coll (https://academic.oup.com/mbe/article/36/12/2656/5564176) ============================= Discoveries ============================Sex-Ratio Meiotic Drive Shapes the Evolution of the Y Chromosome in Drosophila simulans Quentin Helleu, Cécile Courret, David Ogereau, Katie L Burnham, Nicole Chaminade (https://academic.oup.com/mbe/article/36/12/2668/5530600) Speciation in Howea Palms Occurred in Sympatry, Was Preceded by Ancestral Admixture, and Was Associated with Edaphic and Phenological Adaptation Owen G Osborne, Adam Ciezarek, Trevor Wilson, Darren Crayn, Ian Hutton (https://academic.oup.com/mbe/article/36/12/2682/5535536) The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast Chiara Barbieri, Rodrigo Barquera, Leonardo Arias, José R Sandoval, Oscar Acosta (https://academic.oup.com/mbe/article/36/12/2698/5539872) >From Root to Tips: Sporulation Evolution and Specialization in Bacillus subtilis and the Intestinal Pathogen Clostridioides difficile Paula Ramos-Silva, Mónica Serrano, Adriano O Henriques (https://academic.oup.com/mbe/article/36/12/2714/5539873) The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor Ryan J Catchpole, Patrick Forterre (https://academic.oup.com/mbe/article/36/12/2737/5545984) Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses Ronald A Jenner, Bjoern M von Reumont, Lahcen I Campbell, Eivind A B Undheim (https://academic.oup.com/mbe/article/36/12/2748/5545089) Impact of In Vivo Protein Folding Probability on Local Fitness Landscapes Matthew S Faber, Emily E Wrenbeck, Laura R Azouz, Paul J Steiner, Timothy A Whitehead (https://academic.oup.com/mbe/article/36/12/2764/5545982) Unusual Patterns of Mitochondrial Inheritance in the Brown Alga Ectocarpus Laure Mignerot, Chikako Nagasato, Akira F Peters, Marie-Mathilde Perrineau, Delphine Scornet (https://academic.oup.com/mbe/article/36/12/2778/5555418) Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations Rima Mouawad, Jaideep Prasad, Dominic Thorley, Pamela Himadewi, Dhruva Kadiyala (https://academic.oup.com/mbe/article/36/12/2790/5550616) Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha Aaron Hardin, Kimberly A Nevonen, Walter L Eckalbar, Lucia Carbone, Nadav Ahituv (https://academic.oup.com/mbe/article/36/12/2805/5551344) Opposing Pressures of Speed and Efficiency Guide the Evolution of Molecular Machines Jason A Wagoner, Ken A Dill (https://academic.oup.com/mbe/article/36/12/2813/5552150) Direct Evidence of an Increasing Mutational Load in Humans Stéphane Aris-Brosou (https://academic.oup.com/mbe/article/36/12/2823/5551346) Horizontal Transfer of Promiscuous Activity from Nonphotosynthetic Bacteria Contributed to Evolution of Chlorophyll Degradation Pathway Daichi Obata, Atsushi Takabayashi, Ryouichi Tanaka, Ayumi Tanaka, Hisashi Ito (https://academic.oup.com/mbe/article/36/12/2830/5552152) Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Diverse Adaptations Nicholas W VanKuren, Darli Massardo, Sumitha Nallu, Marcus R Kronforst (https://academic.oup.com/mbe/article/36/12/2842/5555817) Solving the Riddle of the Evolution of Shine-Dalgarno Based Translation in Chloroplasts Iddo Weiner, Noam Shahar, Pini Marco, Iftach Yacoby, Tamir Tuller (https://academic.oup.com/mbe/article/36/12/2854/5567106) ============================= Methods ============================Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes Lorenzo Tattini, Nicolò Tellini, Simone Mozzachiodi, Melania D'Angiolo, Sophie Loeillet (https://academic.oup.com/mbe/article/36/12/2861/5545524) A Three-Sample Test for Introgression Matthew W Hahn, Mark S Hibbins (https://academic.oup.com/mbe/article/36/12/2878/5543093) NUQA: Estimating Cancer Spatial and Temporal Heterogeneity and Evolution through Alignment-Free Methods Aideen C Roddy, Anna Jurek-Loughrey, Jose Souza, Alan Gilmore, Paul G O'Reilly (https://academic.oup.com/mbe/article/36/12/2883/5551345) Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies Christos Vlachos, Robert Kofler (https://academic.oup.com/mbe/article/36/12/2890/5545983) Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils Austin H Patton, Mark J Margres, Amanda R Stahlke, Sarah Hendricks, Kevin Lewallen (https://academic.oup.com/mbe/article/36/12/2906/5551343) ============================= Resources ============================Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases Anurag Priyam, Ben J Woodcroft, Vivek Rai, Ismail Moghul, Alekhya Munagala (https://academic.oup.com/mbe/article/36/12/2922/5549819) ============================= News ============================All Ears: Genetic Bases of Mammalian Inner Ear Evolution Joseph Caspermeyer (https://academic.oup.com/mbe/article/36/12/2925/5581265) Sea Otters Shown to Have Low Genetic Diversity Joseph Caspermeyer (https://academic.oup.com/mbe/article/36/12/2926/5581264) Unsubscribe (http://cp20.com/unsubscribe) Manage email alerts (https://academic.oup.com/my-account/email-alerts) Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK. Our Privacy Policy (http://global.oup.com/privacy) sets out how Oxford University Press handles your personal information. The content of this email is protected by copyright. Oxford University Press This email is intended for bionet@evol.biology.mcmaster.ca. ------=_Part_1473079697.1575070797124 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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New issue alert
 
 
 
 
 
 
Molecular Biology and Evolution  
Volume 36 Issue 12
 
December 2019
 
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Fast Track
 
 
 
Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter 
 
Annabel C Beichman; Klaus-Peter Koepfli; Gang Li ; William Murphy; Pasha Dobrynin ...
 
 
Disappearance of Icelandic Walruses Coincided with Norse Settlement border= 
 
Xénia Keighley ; Snæbjörn Pálsson; Bjarni F Einarsson; Aevar Petersen; Meritxell Fernández-Coll ...
 
 
 
Discoveries
 
 
 
Sex-Ratio Meiotic Drive Shapes the Evolution of the Y Chromosome in Drosophila simulans 
 
Quentin Helleu; Cécile Courret; David Ogereau ; Katie L Burnham; Nicole Chaminade ...
 
 
Speciation in Howea Palms Occurred in Sympatry, Was Preceded by Ancestral Admixture, and Was Associated with Edaphic and Phenological Adaptation 
 
Owen G Osborne; Adam Ciezarek; Trevor Wilson ; Darren Crayn; Ian Hutton ...
 
 
The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast border= 
 
Chiara Barbieri ; Rodrigo Barquera; Leonardo Arias; José R Sandoval; Oscar Acosta ...
 
 
From Root to Tips: Sporulation Evolution and Specialization in Bacillus subtilis and the Intestinal Pathogen Clostridioides difficile  border= 
 
Paula Ramos-Silva; Mónica Serrano ; Adriano O Henriques
 
 
The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor border= 
 
Ryan J Catchpole ; Patrick Forterre
 
 
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses border= 
 
Ronald A Jenner ; Bjoern M von Reumont; Lahcen I Campbell; Eivind A B Undheim
 
 
Impact of In Vivo Protein Folding Probability on Local Fitness Landscapes 
 
Matthew S Faber; Emily E Wrenbeck; Laura R Azouz ; Paul J Steiner; Timothy A Whitehead
 
 
Unusual Patterns of Mitochondrial Inheritance in the Brown Alga Ectocarpus 
 
Laure Mignerot; Chikako Nagasato; Akira F Peters ; Marie-Mathilde Perrineau; Delphine Scornet ...
 
 
Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations 
 
Rima Mouawad; Jaideep Prasad; Dominic Thorley ; Pamela Himadewi; Dhruva Kadiyala ...
 
 
Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha  border= 
 
Aaron Hardin; Kimberly A Nevonen ; Walter L Eckalbar; Lucia Carbone; Nadav Ahituv
 
 
Opposing Pressures of Speed and Efficiency Guide the Evolution of Molecular Machines border= 
 
Jason A Wagoner ; Ken A Dill
 
 
Direct Evidence of an Increasing Mutational Load in Humans 
 
Stéphane Aris-Brosou
 
 
Horizontal Transfer of Promiscuous Activity from Nonphotosynthetic Bacteria Contributed to Evolution of Chlorophyll Degradation Pathway 
 
Daichi Obata; Atsushi Takabayashi; Ryouichi Tanaka ; Ayumi Tanaka; Hisashi Ito
 
 
Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Diverse Adaptations 
 
Nicholas W VanKuren; Darli Massardo; Sumitha Nallu ; Marcus R Kronforst
 
 
Solving the Riddle of the Evolution of Shine-Dalgarno Based Translation in Chloroplasts 
 
Iddo Weiner; Noam Shahar; Pini Marco ; Iftach Yacoby; Tamir Tuller
 
 
 
Methods
 
 
 
Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes border= 
 
Lorenzo Tattini ; Nicolò Tellini; Simone Mozzachiodi; Melania D'Angiolo; Sophie Loeillet ...
 
 
A Three-Sample Test for Introgression 
 
Matthew W Hahn; Mark S Hibbins
 
 
NUQA: Estimating Cancer Spatial and Temporal Heterogeneity and Evolution through Alignment-Free Methods border= 
 
Aideen C Roddy ; Anna Jurek-Loughrey; Jose Souza; Alan Gilmore; Paul G O'Reilly ...
 
 
Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies border= 
 
Christos Vlachos ; Robert Kofler
 
 
Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils border= 
 
Austin H Patton ; Mark J Margres; Amanda R Stahlke; Sarah Hendricks; Kevin Lewallen ...
 
 
 
Resources
 
 
 
Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases border= 
 
Anurag Priyam ; Ben J Woodcroft; Vivek Rai; Ismail Moghul; Alekhya Munagala ...
 
 
 
News
 
 
 
All Ears: Genetic Bases of Mammalian Inner Ear Evolution 
 
Joseph Caspermeyer
 
 
Sea Otters Shown to Have Low Genetic Diversity 
 
Joseph Caspermeyer
 
 
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