Subject: PLOS Computational Biology Volume 15(10) October 2019 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: October 01, 2019 to October 31, 2019

Editorials

Ten simple rules for providing optimal administrative support to research teams

Ten simple rules to aid in achieving a vision

Perspective

Patient Dossier: Healthcare queries over distributed resources

Education

Ten quick tips for delivering programming lessons

Research Articles

Estimating influenza incidence using search query deceptiveness and generalized ridge regression

Evolving generalists in switching rugged landscapes

Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

Competition-driven evolution of organismal complexity

Constrained inference in sparse coding reproduces contextual effects and predicts laminar neural dynamics

Predicting gait adaptations due to ankle plantarflexor muscle weakness and contracture using physics-based musculoskeletal simulations

A simulation of the random and directed motion of dendritic cells in chemokine fields

Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations

Dimensional reduction in networks of non-Markovian spiking neurons: Equivalence of synaptic filtering and heterogeneous propagation delays

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs

A computational account of threat-related attentional bias

Consensus and uncertainty in the geographic range of Aedes aegypti and Aedes albopictus in the contiguous United States: Multi-model assessment and synthesis

Evaluation of linear and non-linear activation dynamics models for insect muscle

Phylogenetic correlations can suffice to infer protein partners from sequences

Categorical encoding of decision variables in orbitofrontal cortex

Combinations of low-level and high-level neural processes account for distinct patterns of context-dependent choice

Key residues in TLR4-MD2 tetramer formation identified by free energy simulations

Transitions in information processing dynamics at the whole-brain network level are driven by alterations in neural gain

TAPES: A tool for assessment and prioritisation in exome studies

A Kuramoto model of self-other integration across interpersonal synchronization strategies

Computational design and interpretation of single-RNA translation experiments

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

Surfactant delivery in rat lungs: Comparing 3D geometrical simulation model with experimental instillation

Action potential propagation and synchronisation in myelinated axons

Color improves edge classification in human vision

Sequence specificity despite intrinsic disorder: How a disease-associated Val/Met polymorphism rearranges tertiary interactions in a long disordered protein

Spectral tuning of adaptation supports coding of sensory context in auditory cortex

The folded X-pattern is not necessarily a statistical signature of decision confidence

A multi-scale coevolutionary approach to predict interactions between protein domains

LASSI: A lattice model for simulating phase transitions of multivalent proteins

Hypergraph-based connectivity measures for signaling pathway topologies

Uncovering and characterizing splice variants associated with survival in lung cancer patients

Matrigel patterning reflects multicellular contractility

SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways

From space to time: Spatial inhomogeneities lead to the emergence of spatiotemporal sequences in spiking neuronal networks

Matrix feedback enables diverse higher-order patterning of the extracellular matrix

Coding Locations Relative to One or Many Landmarks in Childhood

Seasonal influenza: Modelling approaches to capture immunity propagation

Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity

Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling

Evolution of the nonsense-mediated decay pathway is associated with decreased cytolytic immune infiltration

Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene feature

Ancestral reconstruction of protein interaction networks

Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort

Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise

SCMarker: Ab initio marker selection for single cell transcriptome profiling

EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions

Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals

Energetics of optimal undulatory swimming organisms

Delayed feedback embedded in perception-action coordination cycles results in anticipation behavior during synchronized rhythmic action: A dynamical systems approach

Fungal feature tracker (FFT): A tool for quantitatively characterizing the morphology and growth of filamentous fungi

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers

Bayesian inference of neuronal assemblies

Corrections

Correction: A unifying Bayesian account of contextual effects in value-based choice

Correction: Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism

Correction: A model for the origin and development of visual orientation selectivity

Correction: Generation of Binary Tree-Child phylogenetic networks

Correction: Modeling differentiation-state transitions linked to therapeutic escape in triple-negative breast cancer

Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA

Correction: Bayesian hypothesis testing and experimental design for two-photon imaging data

Correction: Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer

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